-
ISSP
The institute for Solid State
Physics, The University of
Tokyo -
ITbM
Institute of Transformative
Bio-Molecules, Nagoya
University -
OBtRC
OptoBioTechnology Research
Center, Nagoya Institute of
Technology -
ExCELLS
Exploratory Research Center
on Life and Living Systems,
National Institutes of Natural
Sciences -
MEXT
Ministry of Education, Culture,
Sports, Science and
Technology
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M. Hayashi, M. Saitow, K. Uemura, T. Yanai* . The Journal of Chemical Physics, 160, 194105 (2024)
- ITbM
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Akihiro Kondo, Kazuhiro J. Fujimoto*, Shin-ichi Koda, Shinji Saito, and Takeshi Yanai* . Journal of Chemical Information and Modeling, 66, 1203–1213 (2026)
- ITbM
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Ca2+-Driven Protein Compaction Tunes NIR Absorption in the Thermophilic Purple Bacterial LH1
Kazuhiro J. Fujimoto*, Rio Tsuji, Zheng-Yu Wang-Otomo, and Takeshi Yanai* . The Journal of Physical Chemistry Letters, 17, 4173–4180 (2026)
doi: 10.1021/acs.jpclett.6c00317
- ITbM
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A copper-dependent redox-based hydrogen peroxide perception in plants
Nobuaki Ishihama, Yohta Fukuda, Yumiko Shirano, Kazuhiro J. Fujimoto, Kaori Takizawa, Ryoko Hiroyama, Hiroki Ito, Mayumi Nishimura, Takeshi Yanai, Tsuyoshi Inoue, Ken Shirasu & Anuphon Laohavisit* . Nature Communications, 17, 4236 (2026)
doi: 10.1038/s41467-026-72573-8
- ITbM
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R. Kunisada, M. Hayashi, T. Rohlfs, T. Nagano, K. Sano, N. Inai, N. Noto*, T. Ogaki, Y. Matusi, H. Ikeda, O. G. Mancheño, T. Yanai*, S. Saito* . Chemical Science, 17, 176–186 (2026)
- ITbM
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T. Iino, S. Sendo, T. Yanai* . The Journal of Chemical Physics, 164, 084112 (2026)
- ITbM
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Katsuki Sato, Yui Kanaoka, Tomoya Tsukazaki, Takayuki Uchihashi, Takaharu Mori* . Journal of Chemical Information and Modeling, 66, 4484–4498 (2026)
- ExCELLS
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Key Role of Pro230 in the Hinge Region on the Architecture and Function of IgG1
Yuuki Koseki, Yuki Yamaguchi, Michihiko Aoyama, Kentaro Hiraka, Minoru Tada, Atsuji Kodama, Akinobu Senoo, Akiko Ishii-Watabe, Takayuki Uchihashi, Kazuyoshi Murata, Susumu Uchiyama, Koichi Kato, Saeko Yanaka*, Jose M.M. Caaveiro* . Journal of Medicinal Chemistry, 69, 3902–3914 (2026)
doi: 10.1021/acs.jmedchem.5c02419
- ExCELLS
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Yui Kanaoka, Norie Hamaguchi-Suzuki, Takeshi Murata*, Takayuki Uchihashi* . International Journal of Molecular Sciences, 27, 356 (2026)
- ExCELLS
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Shion Sendo, Kazuhiro J. Fujimoto*, Tomoya Miyashita, Shinji Saito*, Takeshi Yanai* . The Journal of Chemical Physics, 163, 134116 (2025)
- ITbM
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Masaya Hagai*, Kazuhiro J. Fujimoto*, and Takeshi Yanai* . Journal of Chemical Theory and Computation, 21, 11604–11619 (2025)
- ITbM
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M. Hayashi, M. Saitow, T. Yanai* . The Journal of Chemical Physics, 163, 234114 (2025)
- ITbM
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L. Lampe, T. Yanai*, J. Neugebauer* . Journal of Chemical Theory and Computation, 21, 12545–12556 (2025)
- ITbM
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Maho Yagi-Utsumi, Saeko Yanaka, Raymond N. Burton-Smith, Takayuki Uchihashi, Kazuyoshi Murata, Koichi Kato* . ACS Chemical Neuroscience, 16, 2682 (2025)
doi: 10.1021/acschemneuro.5c00217
- ExCELLS
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Structural basis for the interaction between the bacterial cell division proteins FtsZ and ZapA
Junso Fujita, Kazuki Kasai, Kota Hibino, Takayuki Uchihashi*, Hiroyoshi Matsumura* . Nature Communications, 16, 5985 (2025)
doi: 10.1038/s41467-025-60940-w
- ExCELLS
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A look beyond topography: Transient phenomena of Escherichia coli cell division
Christian Ganser*, Shigetaka Nishiguchi, Feng-Yueh Chan, Takayuki Uchihashi* . Science Advances, 11, eads3010 (2025)
- ExCELLS
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AFM observation of protein translocation mediated by one unit of SecYEG-SecA complex
Yui Kanaoka, Takaharu Mori, Takayuki Uchihashi*, Tomoya Tsukazaki* . Nature Communications, 16, 225(2025)
doi: 10.1038/s41467-024-54875-x
- ExCELLS
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Nanoscale visualization of Drosophila E-cadherin ectodomain fragments and their interactions
Hiroki Oda*, Shigetaka Nishiguchi, Chihong Song, Kazuyoshi Murata, Takayuki Uchihashi, Yuki Suzuki . Journal of Molecular Biology, 437, 168875 (2025)
doi: 10.1016/j.jmb.2024.168875
- ExCELLS
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第1章「物質・生体間の相互作用の基礎」 第5節「高速AFMによるソフトマテリアルの動態イメージング技術」
内橋貴之 . 「界面制御による革新的生体適合性材料開発」(高井まどか、三浦佳子 監修) , (株)エヌ・ティー・エス, 2025年12月, ISBN:978-4-86043-782-4 C3047
doi:
- ExCELLS
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2.3.1「走査システムの高速化」
内橋貴之 . 表面分析技術選書「走査プローブ顕微鏡/分光法 第2版」(公益社団法人 日本表面真空学会 編), 丸善出版, 2025年10月31日, ISBN:9784621312018
doi:
- ExCELLS
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Molecular Properties of a Novel Inward Proton Pump Rhodopsin, GhXeR
Nanako Hattori, Yuma Ito, Yuji Furutani, Tatsuro Nishikino, and Hideki Kandori* . The Journal of Physical Chemistry B, published on the web,
- OBtRC
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Proton-Coupled Gate Closing Mechanism in Guillardia theta Anion Channelrhodopsin 1
Miu Sudo†, Sayo Inoko†, Yuma Ito†, Takuma Watanabe†, Arisa Idenawa, Yuya Ohki, Keiko Ogawa, Makoto Demura, Hideki Kandori, Takashi Kikukawa, Yuji Furutani*, Takashi Tsukamoto* . Journal of Molecular Biology, published on the web,
doi: 10.1016/j.jmb.2026.169856
- OBtRC
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Akito Kitaguchi, Takumi Kanazawa, Toshio Nagashima, Toshio Yamazaki, Takashi Okitsu, Keiichi Inoue, Izuru Kawamura* . Biophysical Chemistry, 335, 1076356
doi: 10.1016/j.bpc.2026.107635
- ISSP
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Yuma Ito, Kirill Kovalev, Tatsuro Nishikino, Hideki Kandori, Yuji Furutani* . The Journal of Physical Chemistry Letters, published on the web,
doi: 10.1021/acs.jpclett.6c00234
- OBtRC
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Effects of Counter Ion Protonation on the Ultrafast Excited State Dynamics in Archaerhodopsin-3
Krystyna Herasymenko, Danushka Walisinghe, Masae Konno, Vincent Ledentu, Miquel Huix-Rotllant, Xuchun Yang, Nicolas Ferré, Keiichi Inoue, Massimo Olivucci, Stefan Haacke* . Biophysical Journal, 125, 2416-2431
doi: 10.1016/j.bpj.2026.02.034
- ISSP
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Sahoko Tomida, Rei Abe-Yoshizumi, Akimori Wada, Hideki Kandori, Yuji Furutani* . Journal of Biological Chemistry, published on the web,
doi: 10.1016/j.jbc.2026.111313
- OBtRC
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Surface Density-Dependent Interactions between Photoactivated Sensory Rhodopsin 2 and Its Transducer
Tatsuya Sakamoto, Jingyi Tang, Soichiro Kato, Insyeerah Binti Muhammad Jauhari, Tatsuro Nishikino, Yuji Furutani* . ACS Omega, 11, 10478-10491 (2026)
- OBtRC
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María del Carmen Marín*, Masae Konno, Andrey Rozenberg, Oded Béjà, Keiichi Inoue* . Biophysical Journal, 125, 2391-2404
doi: 10.1016/j.bpj.2026.02.022
- ISSP
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Spectral diversity of vertebrate retinal photoisomerase RGRs
Takashi Nagata†,*, Chunyangguang Li†, Naoya Morimoto, Keiichi Inoue* . Biophysical Journal, 125, 2356-2362
doi: 10.1016/j.bpj.2026.01.047
- ISSP
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Light-harvesting by antenna-containing xanthorhodopsin from an antarctic cyanobacterium
María del Carmen Marín*, Shunya Murakoshi, Andrey Rozenberg, Tatsuki Tanaka, Masae Konno, Wataru Shihoya*, Osamu Nureki*, Keiichi Inoue*, Oded Béjà* . Communications Biology, 9, 28 (2026)
doi: 10.1038/s42003-025-09294-z
- ISSP
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Protonation-enhanced energy transfer in xanthorhodopsin Kin4B8
Kazuhiro J. Fujimoto*, Yuta A. Tsuzuki, Masae Konno, Takashi Nagata, Rintaro Murakami, Keiichi Inoue*, Takeshi Yanai* . The Journal of Physical Chemistry Letters, 16, 11884-11892 (2025)
doi: 10.1021/acs.jpclett.5c02898
- ISSP
- ITbM
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Light-induced FTIR spectroscopy of visual rhodopsin microcrystals grown in lipidic cubic phase
Yosuke Mizuno†, Valérie Panneels†, Yuji Furutani*, Gebhard F.X. Schertler, Hideki Kandori, Kota Katayama* . Journal of Molecular Biology, 437, 169487 (2025)
doi: 10.1016/j.jmb.2025.169487
- OBtRC
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Hydrated ionic liquids enhance stability and preserve functionality in transmembrane proteins
Kyoko Fujita*, Kaho Ishii, Kazune Kobayashi, Yuji Furutani*, Yutaka Takebe, Eiichi Mizohata* . International Journal of Biological Macromolecules, 330, 148096 (2025)
doi: 10.1016/j.ijbiomac.2025.148096
- OBtRC
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Apusomonad rhodopsins: A new family of ultraviolet to blue light–absorbing rhodopsin channels
Luis Javier Galindo*, Shunki Takaramoto, Takashi Nagata, Andrey Rozenberg, Hiroto Takahashi, Oded Béjà, Keiichi Inoue* . Proceedings of the National Academy of Sciences of the United States of America, 122, e2510619122 (2025)
- ISSP
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Carotenoids bind rhodopsins and act as photocycle-accelerating pigments in marine Bacteroidota
Takayoshi Fujiwara, Toshiaki Hosaka, Masumi Hasegawa-Takano, Yosuke Nishimura, Kento Tominaga, Kaho Mori, Satoshi Nishino, Yuno Takahashi, Tomomi Uchikubo-Kamo, Kazuharu Hanada, Takashi Maoka, Shinichi Takaichi, Keiichi Inoue*, Mikako Shirouzu*, Susumu Yoshizawa* . Nature Microbiology, 10, 2603-2615 (2025)
doi: 10.1038/s41564-025-02109-1
- ISSP
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Hiroto Takahashi, Shunki Takaramoto, Takashi Nagata, Shai Fainsod, Yoshitaka Kato, Oded Béjà, Keiichi Inoue . Biophysics and Physicobiology, 22, e220014 (2025)
doi: 10.2142/biophysico.bppb-v22.0014
- ISSP
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Rio Tsuji, Kazuhiro J. Fujimoto*, Naho Hiwatashi, Zheng-Yu Wang-Otomo, Takeshi Yanai* . The Journal of Physical Chemistry B, 129, 6153–6162 (2025)
- ITbM
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In-insect synthesis of oxygen-doped molecular nanocarbons
Atsushi Usami*, Hideya Kono, Vic Austen, Quan Manh Phung, Hiroki Shudo, Tomoki Kato, Hayato Yamada, Akiko Yagi, Kazuma Amaike, Kazuhiro J. Fujimoto*, Takeshi Yanai*, Kenichiro Itami* . Science, 388, 1055-1061 (2025)
- ITbM
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Takashi Nagata, Yuma Kawasaki, Masae Konno, Keiichi Inoue* . The Journal of Physical Chemistry Letters, 16, 6622-6626
doi: 10.1021/acs.jpclett.5c00869
- ISSP
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Keisei Shibata*, Yuma Kawasaki, Shunki Takaramoto, Masaya Watanabe, Masahiro Fukuda, Ryohei Ono, Hideaki E. Kato, Hidefumi Akiyama, Keiichi Inoue* . The Journal of Physical Chemistry Letters, 16, 6234-6241
doi: 10.1021/acs.jpclett.5c01008
- ISSP
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Yuma Ito, Tatsuro Nishikino, Hideki Kandori, Yuji Furutani . Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1866, 149556 (2025)
doi: 10.1016/j.bbabio.2025.149556
- OBtRC
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Light-harvesting by antenna-containing rhodopsins in pelagic Asgard archaea
Gali Tzlil, María del Carmen Marín, Yuma Matsuzaki, Probal Nag†, Shota Itakura, Yosuke Mizuno, Shunya Murakoshi, Tatsuki Tanaka, Shirley Larom, Masae Konno, Rei Abe-Yoshizumi, Ana Molina-Márquez, Daniela Bárcenas-Pérez, José Cheel, Michal Koblížek, Rosa León, Kota Katayama, Hideki Kandori, Igor Schapiro, Wataru Shihoya*, Osamu Nureki*, Keiichi Inoue*, Andrey Rozenberg*, Ariel Chazan*, Oded Béjà* . Nature Microbiology, 10, 1484-1500 (2025)
doi: 10.1038/s41564-025-02016-5
- ISSP
- OBtRC
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Krystyna Herasymenko, Danushka Walisinghe, Masae Konno, Leonardo Barneschi, Isabelle de Waele, Michel Sliwa, Keiichi Inoue*, Massimo Olivucci*, Stefan Haacke* . Chemical Science, 16, 761-774 (2025)
- ISSP
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Weak organic acid effect of bacterial light-driven proton-pumping rhodopsin
Zikun Lyu, Shunki Takaramoto, Keiichi Inoue* . The Journal of Physical Chemistry B, 129, 3198-3206 (2025)
- ISSP
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HulaCCR1, a Pump-like Cation Channelrhodopsin Discovered in a Lake Microbiome
Shunki Takaramoto, Shai Fainsod, Takashi Nagata, Andrey Rozenberg, Oded Béjà, Keiichi Inoue* . Journal of Molecular Biology, 436, 168844 (2024)
doi: 10.1016/j.jmb.2024.168844
- ISSP
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Single-Molecule Kinetic Observation of Antibody Interactions with Growing Amyloid β Fibrils
Maho Yagi-Utsumi, Yui Kanaoka, Shogo Miyajima, Satoru G. Itoh, Katsuhiko Yanagisawa, Hisashi Okumura, Takayuki Uchihashi*, Koichi Kato* . Journal of the American Chemical Society, 146, 31518–31528
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Saeko Yanaka, Hiroki watanabe, Rina Yogo, Mesayamas Kongsema, Sachiko Kondo, Hirokazu Yagi, Takayuki Uchihashi, and Koichi Kato . Biological and Pharmaceutical Bulletin, 4, 1334-338
- ExCELLS
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Kazuhiro J. Fujimoto*, Rio Tsuji, Zheng-Yu Wang-Otomo, Takeshi Yanai* . ACS Physical Chemistry Au, 4, 499-509
doi: 10.1021/acsphyschemau.4c00022
- ITbM
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Takuma Sasaki, Kota Katayama*, Hiroo Imai, Hideki Kandori* . Biochemistry, 63, 843-854
doi: 10.1021/acs.biochem.3c00594
- OBtRC
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Photoisomerization pathway of the microbial rhodopsin chromophore in solution
Masahiro Sugiura, Hideki Kandori* . Photochemical & Photobiological Sciences, 23, 1435-1443
doi: 10.1007/s43630-024-00602-w
- OBtRC
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Unique hydrogen-bonding network in a viral channelrhodopsin rhodopsin
Mako Aoyama, Kota Katayama, Hideki Kandori* . Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1865, 149148
doi: 10.1016/j.bbabio.2024.149148
- OBtRC
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FTIR study of light-induced proton transfer and Ca2+ binding in T82D mutant of TAT rhodopsin
Teppei Sugimoto, Kota Katayama, Hideki Kandori* . Biophysical Journal, 123, published on the web
doi: 10.1016/j.bpj.2024.08.005
- OBtRC
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Toshiki Nakamura, Manish Singh, Masahiro Sugiura, Soichiro Kato, Ryo Yamamoto, Hideki Kandori, Yuji Furutani* . Journal of Molecular Biology, 436, 168666
doi: 10.1016/j.jmb.2024.168666
- OBtRC
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Low-temperature FTIR spectroscopy of the L/Q switch of proteorhodopsin
Tatsuro Nishikino, Teppei Sugimoto, Hideki Kandori* . Physical Chemistry Chemical Physics, 26, 22959-22967
- OBtRC
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Saeko Yanaka, Rina Yogo, Hirokazu Yagi, Masayoshi Onitsuka, Natsumi Wakaizumi, Yuki Yamaguchi, Susumu Uchiyama, and Koichi Kato . Frontiers in Immunology, 14, 1090898
doi: 10.3389/fimmu.2023.1090898
- ExCELLS
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Light-driven Anion-Pumping Rhodopsin with Unique Cytoplasmic Anion-release Mechanism
Tomohiro Ishizuka, Kano Suzuki, Masae Konno, Keisei Shibata, Yuma Kawasaki, Hidefumi Akiyama, Takeshi Murata*, Keiichi Inoue* . Journal of Biological Chemistry, 300, 107797
doi: 10.1016/j.jbc.2024.107797
- ISSP
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Tatsuki Tanaka†, Shoko Hososhima†, Yo Yamashita, Teppei Sugimoto, Toshiki Nakamura, Shunta Shigemura, Wataru Iida, Fumiya K. Sano, Kazumasa Oda, Takayuki Uchihashi, Kota Katayama, Yuji Furutani, Satoshi P. Tsunoda, Wataru Shihoya,* Hideki Kandori*, Osamu Nureki* . Molecular Cell, 84, 3530-3544.e6
doi: 10.1016/j.molcel.2024.08.016
- OBtRC
- ExCELLS
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Magnetic Damping of NiFe Thin Films Grown on Two-Dimensional Chiral Hybrid Lead-iodide Perovskites
Tempei Hatajiri, Shoya Sakamoto*, Hidetoshi Kosaki, Zikang Tian, Miuko Tanaka, Toshiya Ideue, Keiichi Inoue, Daigo Miyajima, Shinji Miwa* . Physical Review B, 10, 054435
doi: 10.1103/PhysRevB.110.054435
- ISSP
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Éva Bertalan†, Masae Konno†, María del Carmen Marín, Reza Bagherzadeh, Takashi Nagata, Leonid Brown, Keiichi Inoue*, Ana-Nicoleta Bondar* . The Journal of Physical Chemistry B, 128, 7407–7426
doi: https://doi.org/10.1021/acs.jpcb.4c02946
- ISSP
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Kazuhiro J. Fujimoto*, Yuta A. Tsuzuki, Keiichi Inoue, Takeshi Yanai* . The Journal of Physical Chemistry Letters, 15, 2389-2397 (2024)
doi: 10.1021/acs.jpclett.4c00879
- ISSP
- ITbM
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Masaya Hagai*, Naoto Inai, Takuma Yasuda*, Kazuhiro J. Fujimoto*, Takeshi Yanai* . Science Advances, 10, eadk3219 (2024)
- ITbM
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Kazuhiro J. Fujimoto*, Takuya Seki, Takumi Minoda, Takeshi Yanai* . Journal of the American Chemical Society, 146, 3984-3991 (2024)
- ITbM